1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgtcctcagttccttttgtaaatttgaatacttgaatggattatgttgattgagaaggtctgatgaacctttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGAGATGATGAAGCTGTTACTCCTATTAAAAAAGACGGCATAAAAAGAAAA
species | Glycine max |
transcript | GLYMA07G01830.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGEST: gi|207713576|gb|GD695251.1|GD695251
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGEST: gi|7685236|gb|AW755884.1|AW755884
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGEST: gi|6718731|gb|AW306378.1|AW306378
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
EST: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAA TCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
genomic: GAGCCAGATCTAGGGATACCTCTAGATCTTCTTGATCTCAGTGTTTACAAgtactgtcct ... ttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCG
gaatacttgaatggattatgttgattgagaaggtctgatgaacctttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGAGATGATGAAGCTGTTACTCCTATTAAAAAAGACGGCATAAAAAGAAAA
gtctgat putative branch site (score: 4)
cctttttat putative PPT
tttttataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtcctcagttccttttgtaaatttgaatacttgaatggattatgttgattgagaaggtctgatgaacctttttatacagTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATAAAGAATTGTTGCGAGATGATGAAGCTGTTACTCCTATTAAAAAAGACGGCATAAAAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA