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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactcagcttgaattttcttataaaatttcaagcgtcatttttgccactccatattgttacaaatttactattttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGG

Basic information

species Glycine max
transcript GLYMA07G01240.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01240.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G55130.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataactcagcttgaattttcttataaaatttcaagcgtc---atttttgccactccatattgttacaaatttactattttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGG
|||  ||    ||| ||  |      ||| | |  |   |       ||| |   | |  ||    |  | | | || |  |  |  |||| || ||| | ||||| |||||  ||||||||||||||||| |||||||||| ||||  || |  ||  |||  ||| |||| |||||||| |||||||
gtaacacgtctctttaacctatgaccaaactctttactttttaagcattttcttgtaccaatctggagtagtatgctttgcttttgtagAGTAAAGAGAAAAAATACTTTATCCATAACCACTTGAGTTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGG

upper sequence: GLYMA07G01240.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G13772.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataactcagcttgaattttcttataaaatttcaagcgtcatttttgccactccatattgttacaaat--ttactattttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGG
||||  |||    | || | |     |    ||||  | |   | || ||  |    ||    || |||  || ||    |     ||||||| ||||||||||| |||||  |||| |||||||| ||| |||||||||| ||||  || |  ||  ||| ||||||||| ||||||||||||||||
gtatgtctc----taaactct-----agtgcttcagtctttgctattaccttttatcataccaactaatagttgcttggctttcgtagAGCAAAGAGGAGAAATACTTTATACATAATCACTTGAGCTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTTGAGG

upper sequence: GLYMA07G01240.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g02140.t01 (Vitis vinifera), 3'ss of exon 4
--gtataactcagcttgaattttcttataaaat-ttcaagcgtcatttttgccactccatattgttacaaatttactattttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGG
  |  || || |  |  | |  | ||||| |||  |||   || |  |||              |  |  | ||  | |  |  | ||||| || |||||||| |||||||| |||||||||||||| ||||  ||||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||
gtgagtagctgaaatctattgctattatagaatactcacaggttaaattta------------atcgcccacttg-tgtacttttgcagAGTAAAGAGGAGAAGTATTTTATCAATAACCACTTGAGCTTCAAGGTCATGTATCATAAGGATCCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208271147|gb|GE069959.1|GE069959
EST:     CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGG                         AGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG
genomic: CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGgtataactca ... tttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG
EST: gi|213592925|gb|DB966030.1|DB966030
EST:     CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGG                         AGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG
genomic: CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGgtataactca ... tttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG
EST: gi|192310001|gb|FK000621.1|FK000621
EST:     CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACCATCAAGGG                         AGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG
genomic: CAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGgtataactca ... tttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaagcgtcatttttgccactccatattgttacaaatttactattttcctacagAGCAAGGAGGAGAAATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGG
                                     tttactattttcct  CT-rich tract
                        atattgttacaaattt  TA-rich tract