1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gggggatcaaatttgcaattttgccataaattaagtgtcattcattaaactgggttatgttttgtttattggctattcatttcttgtacatgactagtagGTTGGAACTATATCTGCAAATGGGGAGCGTGACATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGGGTCATTACTGTCGTT
species | Glycine max |
transcript | GLYMA07G01190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAAGAGGAGAGCATTGATGATTAGTACGTCAGAAGAGATAACCCAG GTTGGAACTATATCTGCAAATGGGGAGCGTGAEST: gi|209715709|gb|BW674371.1|BW674371
genomic: AGTTGAAGAGGAGAGCATTGATGATTAGTACGTCAGAAGAGATAACCCAGgtgcaagggc ... tgactagtagGTTGGAACTATATCTGCAAATGGGGAGCGTGA
EST: AGTTGAAGAGGAGAGCATTGATGATTAGTACGTCAGAAGAGATAACCCAG GTTGGAACTATATCTGCAAA
genomic: AGTTGAAGAGGAGAGCATTGATGATTAGTACGTCAGAAGAGATAACCCAGgtgcaagggc ... tgactagtagGTTGGAACTATATCTGCAAA
taaactgggttatgttttgtttattggctattcatttcttgtacatgactagtagGTTGGAACTATATCTGCAAATGGGGAGCGTGACATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGGGTCATTACTGTCGTT
ttatgttttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggggatcaaatttgcaattttgccataaattaagtgtcattcattaaactgggttatgttttgtttattggctattcatttcttgtacatgactagtagGTTGGAACTATATCTGCAAATGGGGAGCGTGACATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGGGTCATTACTGTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gggggat
- - - - - -tttgcaa
- - - - - - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg