1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaaaatgctattgaaattgttcatcttcacatttagcactctaatatctatttaacattgtctacataataaaataatgtttcagaatcttttgttcagGTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTTTCTACCCGAGTGATGGGAACTTTTGG
species | Glycine max |
transcript | GLYMA07G00680.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGACATCAAGGCATCTAACATTCTTCTTGATGAAAGTTTTGAGGCTAAG GTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTT
genomic: GAGACATCAAGGCATCTAACATTCTTCTTGATGAAAGTTTTGAGGCTAAGgtaagtttta ... ttttgttcagGTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTT
tatctatttaacattgtctacataataaaataatgtttcagaatcttttgttcagGTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTTTCTACCCGAGTGATGGGAACTTTTGG
atttaac putative branch site (score: 3)
tcttttgttc putative PPT
atttaacattgtctac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaatgctattgaaattgttcatcttcacatttagcactctaatatctatttaacattgtctacataataaaataatgtttcagaatcttttgttcagGTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTTTCTACCCGAGTGATGGGAACTTTTGG
- - - -gctattg
- - - - - - - - - - - - tcttcac
- - - - - - - - - - - - - - - - - - gcactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa