Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagaagcttttttttttttaaaaaaaaaaatttcttttactgttttgacatttccatatttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT

Basic information

species Glycine max
transcript GLYMA06G47830.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309988|gb|FK002512.1|FK002512
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|151401062|gb|EV270876.1|EV270876
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|254335741|gb|GR847269.1|GR847269
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|17152886|gb|BM142819.1|BM142819
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|193386235|gb|FK349441.1|FK349441
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGG-ACAAGCCATGGG
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGG
EST: gi|254335742|gb|GR847270.1|GR847270
EST:     CTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: CTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|254335876|gb|GR847404.1|GR847404
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|4297313|gb|AI442600.1|AI442600
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGAAGAG                         GTACTGGAATAATGAGGAGGTTTTG
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTG
EST: gi|21601758|gb|BQ612089.1|BQ612089
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: gi|151407493|gb|EV277308.1|EV277308
EST:     AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG                         GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT
                                           tttttatttc  CT-rich tract
 ttcttaagtgattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttagaagcttttttttttttaaaaaaaaaaatttcttttactgttttgacatttccatatttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT