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gtttagaagcttttttttttttaaaaaaaaaaatttcttttactgttttgacatttccatatttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT
species | Glycine max |
transcript | GLYMA06G47830.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|151401062|gb|EV270876.1|EV270876
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|254335741|gb|GR847269.1|GR847269
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|17152886|gb|BM142819.1|BM142819
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|193386235|gb|FK349441.1|FK349441
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGG-ACAAGCCATGGGEST: gi|254335742|gb|GR847270.1|GR847270
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGG
EST: CTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|254335876|gb|GR847404.1|GR847404
genomic: CTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|4297313|gb|AI442600.1|AI442600
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGAAGAG GTACTGGAATAATGAGGAGGTTTTGEST: gi|21601758|gb|BQ612089.1|BQ612089
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTG
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTEST: gi|151407493|gb|EV277308.1|EV277308
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
EST: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAG GTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
genomic: AAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGgtttagaagc ... tttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCT
tttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT
tttttatttc CT-rich tract
ttcttaagtgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagaagcttttttttttttaaaaaaaaaaatttcttttactgttttgacatttccatatttcccccataatatttatgtcaagtagcttcttaagtgattatttttatttcagGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT