Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcttatttcttccccttttacttattcctttcctcccagttgcccacctgatagtggaaacaagcttaactttggttatttccttgaccgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTAATAAAAAATCTGCACCTAAGCCTGCACCAAAACATGATATTCCAGAGAA

Basic information

species Glycine max
transcript GLYMA06G46640.1
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299072|gb|FG992848.1|FG992848
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGG-ATGAGAATGCCCGAG-TGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacctgatagtggaaacaagcttaactttggttatttccttgaccgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTAATAAAAAATCTGCACCTAAGCCTGCACCAAAACATGATATTCCAGAGAA
                                    ttccttgac  putative branch site 
                      ttaacttt  TA-rich tract