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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgcctatacatgttgccactatcatgtcaccggaccttgtactggatgccatgtaccatacagaattttctccccatgcataacagaactggagaagtttgccttttggcatttactttattttatttttatttttctaaatcagtgtgttgttcatgtactgcagGCATGCGAGGTGCTGTCAAAACCACAGAAATCCCTTGCTTATTTGCTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTACAG

Basic information

species Glycine max
transcript GLYMA06G46220.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 4
gtgagctgcctatacatgttgccactatcatgtcaccggaccttgtactggatgccatgtaccatacagaattttctccccatgcataacagaactggagaagtttgcct-tttggcatttactttatttt--atttttattttt--ctaaatcagtgtgttgttca--tgtactgcagGCATGCGAGGTGCTGTCAAAACCACAGAAATCCCTTGCTTATTTGCTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTACAG
                                                                       |  | |  |  || |        ||   | | ||| | |  ||  ||||  | || | ||  ||   || |||   | || |   | |||| |||   | |   |||||| || |||||| ||||||||||||| ||||| |||||||| || |||||||| || || || ||  ||||||| ||||| ||||||
----------------------------------------------------------------------gtgatttttcagtgtactgattttctactggaattttcttacttatcattaccattgtgttgaatgactagtttctaccaagttgat-tgttattctattctgaggcagGCGTGTGAGGTGTTGTCAAAACCACAAAAATCACTTGCTTACTTACTTGAAACGTATTGTGGAGTAGCAACAAACAAATTGTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactttattttatttttatttttctaaatcagtgtgttgttcatgtactgcagGCATGCGAGGTGCTGTCAAAACCACAGAAATCCCTTGCTTATTTGCTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTACAG
                       ttctaaa  putative branch site (score: 2)
     tttattttatttttat  TA-rich tract