Sequence
atgc intronic sequence ATGC exonic sequencegtacatatatttatttttggaaccaatagcttaaattgtaggcatgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG
Basic information
species | Glycine max |
transcript | GLYMA06G46120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G46120.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G21700.3 (Arabidopsis thaliana), 3'ss of exon 3
------gtacatatatttatttttggaaccaatagcttaaattgtaggcatgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG
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cttaaaaaaaatatgatatttttcaatgttttttgtttaagatcaaatgttattgttttggtgaagctaaacactgatag-gtttgataaata--tattacagACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAG
upper sequence: GLYMA06G46120.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G21700.2 (Arabidopsis thaliana), 3'ss of exon 3
------gtacatatatttatttttggaaccaatagcttaaattgtaggcatgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG----------------
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cttaaaaaaaatatgatatttttcaatgttttttgtttaagatcaaatgttattgttttggtgaagctaaacactgatag-gtttgataaata--tattacagACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGTAATGTTTTTAACCA
upper sequence: GLYMA06G46120.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0059g02280.t01 (Vitis vinifera), 3'ss of exon 4
gtacatatatttatttttggaaccaatagcttaaattgtaggcatgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG
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gtactcacatttgattctct--cctat-gttttagcagtt--catttcgtcttacatttttctctctttctcggcttttcttg-----ttgctacagAATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG
tttttgt CT-rich tract
aatttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatatatttatttttggaaccaatagcttaaattgtaggcatgtggatgcagaggaatgagaatgttatagtgttttgtgctcaatttttgtagACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC