Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttaatgtgttaaaaatttaaaatcattttggtgattgttttggtatggttgtgttctggcttagtgggactccttcattagacggatttgaagacctttacaaattgactacttcctatgactctggcagGAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAG
Basic information
species | Glycine max |
transcript | GLYMA06G44340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtttaatgtgttaaaaatttaaaatcattttggtgattgttttggtatggttgtgttctggcttagtgggactccttcattagacggatttgaagacctttacaaattgactacttcctatgactctggcagGAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAG
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--------------------ttttgctgttattttggtgtctatattggccct-ctgcaatcttgttcat----acctcttcactaga-atatctga---------ttaattggttcatttgt-caacaatttcagGAGAGTCTAAAGTACAGATTGTTAGGATCAGAAGGTGATATTGGTTCCTGGGGCCATGAGTATGTCAG
upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S414_22V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagt--ttaatgtgttaaaaatttaaaatcattttggtgattgttttggtatggttgtgttctggcttagtgggactccttcattagacggatttgaagacctttacaaattgactacttcctatgactctggcagGAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAG
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gtaagtgcttcgcttgacacgagttgcatttaagttcaccctatattttaat----ttgtgttcaagtaaa---------ctttgtcaaatggttggtgtgacctg-attgtttga-tcttcacgattatacgtgcagGAAAGCTTGCGCTACAGATTGCAGGGTACGGTTGGAGACATTGGTTCTTGGGGCCACGAGTATGTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213617174|gb|DB971293.1|DB971293EST: CGGATATATTGTCGGTTTTGGCACTCACAATGTCTGCTGAAGGAGAACGA GAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGC
genomic: CGGATATATTGTCGGTTTTGGCACTCACAATGTCTGCTGAAGGAGAACGAgtaagtttaa ... actctggcagGAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattagacggatttgaagacctttacaaattgactacttcctatgactctggcagGAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAG
aattgac putative branch site (score: 3)
tttacaaatt TA-rich tract