1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacctttatctatattttaggtcgttgtctacaatgaaagttcatatctgtttctccatagcagtttatcatattggttattgtggttgctgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAAAAGAGAGAGGCTCGAAGAGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAG
species | Glycine max |
transcript | GLYMA06G43930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCCAAGGAAAGAGAAAEST: gi|193623854|gb|FK575582.1|FK575582
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAA
EST: AAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTTGAAGACAAG GGAGAAAATAATGACAACTCCAAGGAAAGAGAAAEST: gi|193675302|gb|FK618658.1|FK618658
genomic: AAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTT-GAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAA
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTACCAAEST: gi|254345742|gb|GR859389.1|GR859389
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACT-CCAA
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCCEST: gi|21889376|gb|BQ742589.1|BQ742589
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCC
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCEST: gi|18690832|gb|BM519680.1|BM519680
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTC
EST: AAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGAACA-G GGAGAAAATAATGACAACTCCAAGGAEST: gi|208101229|gb|GD898588.1|GD898588
genomic: AAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGA-CAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCCAAGGA
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAA-TAAATGACAACTCCAAGGEST: gi|208229960|gb|GE023371.1|GE023371
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAA-TGACAACTCCAAGG
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCCAAGGEST: gi|6502229|gb|AW203602.1|AW203602
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCCAAGG
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATTATGANCA-CTNCAAGGAAAGAGAAAAAGAGAGAGEST: gi|193639236|gb|FK586457.1|FK586457
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGA-CAACTCCAAGGAAAGAGAAAAAGAGAGAG
EST: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCCAAGGAAAGAGAAAEST: gi|208208147|gb|GE005506.1|GE005506
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAA
EST: AAAATGACACAGATGCGGATACGTATGAGGAAACTTGCTTTGAAGACAAG GGAGAAAATAATGACAACTCC
genomic: AAAATGACACAGATGAGGATACGTATGAGGAAACTTGCTTTGAAGACAAGgtttgaaatc ... tgttgtacagGGAGAAAATAATGACAACTCC
atctgtttctccatagcagtttatcatattggttattgtggttgctgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAAAAGAGAGAGGCTCGAAGAGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAG
tttatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctttatctatattttaggtcgttgtctacaatgaaagttcatatctgtttctccatagcagtttatcatattggttattgtggttgctgttgtacagGGAGAAAATAATGACAACTCCAAGGAAAGAGAAAAAGAGAGAGGCTCGAAGAGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg