1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcttttgcattgtgactcctattacaatatcgaggatcatatttttccatgtttttccaactgacatttcttgtttacttgggatttttgtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT
species | Glycine max |
transcript | GLYMA06G43620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTG GTCAAAGGTGAAEST: gi|213590966|gb|DB973749.1|DB973749
genomic: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGgtatgttgat ... gtgtgatcagGTCAAAGGTGAA
EST: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTG GTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCAEST: gi|213605410|gb|DB966931.1|DB966931
genomic: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGgtatgttgat ... gtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCA
EST: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTG GTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGEST: gi|208139598|gb|GD934304.1|GD934304
genomic: CTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGgtatgttgat ... gtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGG
EST: TCTTACACACCAGGTTAAGATATGTGATTTTGGTAAGTGCAAAAGTGCTG GTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTTACCGGGC
genomic: TCTTACACACCAGGTTAAGATATGTGATTTTGG-AAGTGCAAAAGTGCTGgtatgttgat ... gtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCT-ACCGGGC
ttccatgtttttccaactgacatttcttgtttacttgggatttttgtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT
aactgac putative branch site (score: 2)
tttttgt putative PPT
atttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttttgcattgtgactcctattacaatatcgaggatcatatttttccatgtttttccaactgacatttcttgtttacttgggatttttgtgtgatcagGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTT
-gcttttg
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