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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatgatggaaaaaaaaattatgaatcaaagttatttttgtataactgattaaccttttttttcctgtgatgcttacttccataatacatttttcagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTGAATGGAAAAGTCA

Basic information

species Glycine max
transcript GLYMA06G41630.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaaatgatggaaaaaaaaattatgaatcaaagttatttttgtataactgattaaccttttttttcctgtgatgcttacttccataatacatttttcagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTGAATGGAAAAGTCA
               |||  | |||| |||  ||  |  |    |||  |||  |||   ||  ||   | |||     ||||  ||  |    | | ||||||||  | |||||||||||| | || ||||| || |||||||| ||||| |||||||||||| |||||||||||||||||||| || | || ||||| |
-------------gtaaaggagttattaatataacct--taacctatttctgtataatgcttacttggttttga-----acttttattctttcgtctgcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTTCAAACTGATCTTACACCTCTGTGGGACATTGACATGGAAGGGAAAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactgattaaccttttttttcctgtgatgcttacttccataatacatttttcagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTGAATGGAAAAGTCA
                            tgcttac  putative branch site (score: 2)
                                             catttttc  putative PPT
      attaacctttttttt  TA-rich tract