1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgaaggttacatagtccatatggtgttgcactatttttctctcttttctactgttttttagttatgtgttaccttgattaatcttttatccaatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAG
species | Glycine max |
transcript | GLYMA06G36620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCT ATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCCATCATGGAATAEST: gi|192334372|gb|FK024093.1|FK024093
genomic: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTgtatgtttca ... caatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATA
EST: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCT ATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATAEST: gi|192331619|gb|FK022779.1|FK022779
genomic: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTgtatgtttca ... caatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATA
EST: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCT ATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATAEST: gi|9565785|gb|BE475294.1|BE475294
genomic: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTgtatgtttca ... caatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATA
EST: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCT ATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATA
genomic: TAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTgtatgtttca ... caatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATA
ttctactgttttttagttatgtgttaccttgattaatcttttatccaatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAG
gattaat putative branch site (score: 3)
tcttttatcc CT-rich tract
ttgattaatcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaggttacatagtccatatggtgttgcactatttttctctcttttctactgttttttagttatgtgttaccttgattaatcttttatccaatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttacc