1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgtgatttaggggttattttatttatttatattgatttttatgcatatgtataattgttgcaagagaggatatgccaacatgaatttttttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAG
species | Glycine max |
transcript | GLYMA06G25880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG GTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAEST: gi|51342073|gb|CO983339.1|CO983339
genomic: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGgtaatttaac ... tttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCA
EST: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG GTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAEST: gi|120532442|gb|EH260575.1|EH260575
genomic: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGgtaatttaac ... tttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCA
EST: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG GTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCA
genomic: CTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGgtaatttaac ... tttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCA
catatgtataattgttgcaagagaggatatgccaacatgaatttttttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAG
tttttttttttc CT-rich tract
aacatgaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgatttaggggttattttatttatttatattgatttttatgcatatgtataattgttgcaagagaggatatgccaacatgaatttttttttttcagGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG