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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctccaatttatctttccatagatatttgaaactgtctattttttagtgtctccaaagaatgttccaaagtaacttttgtcatcatttccccattctgatgatttgtttttctgaatgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGCAAACACGCCACTAGTCCAGTGTACCAGCCATATGTGTCCTATTCGAGTG

Basic information

species Glycine max
transcript GLYMA06G22410.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827566|gb|BE211296.1|BE211296
EST:     ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGA                         TCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
genomic: ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGAgtaagtctcc ... tgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
EST: gi|19052834|gb|BM731501.1|BM731501
EST:     ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGA                         TCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
genomic: ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGAgtaagtctcc ... tgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
EST: gi|193590089|gb|FK544781.1|FK544781
EST:     AACCTGGCAGCTGTGTAGA                         TCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
genomic: AACCTGGCAGCTGTGTAGAgtaagtctcc ... tgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
EST: gi|7925487|gb|AW831513.1|AW831513
EST:     ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGA                         TGCAAATTCGCCACATTTAGCTCCAGTTGTATCAGCATCAGGCAAAACGGC
genomic: ACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGAgtaagtctcc ... tgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
EST: gi|11413760|gb|BF425771.1|BF425771
EST:     TGGCAGCTGTGTAGA                         TCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC
genomic: TGGCAGCTGTGTAGAgtaagtctcc ... tgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttttgtcatcatttccccattctgatgatttgtttttctgaatgtcctgcagTCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGCAAACACGCCACTAGTCCAGTGTACCAGCCATATGTGTCCTATTCGAGTG
                              atttgttttt  TA-rich tract