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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatattcatggatttcttataggcttactgttaatagattctgttgtttcattacaatttgtatgatgtgtaatatggcttccctttttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637439|gb|FK584462.1|FK584462
EST:     ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATG                         ACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
genomic: ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatat ... ttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
EST: gi|207704244|gb|GD685030.1|GD685030
EST:     ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATG                         ACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA
genomic: ACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGgtgagaatat ... ttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtttcattacaatttgtatgatgtgtaatatggcttccctttttatttcaagACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG
                                    cttccctttttatttc  CT-rich tract
        attacaatttgtat  TA-rich tract