1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatataactagttatttttttaaaactagttttttggagcatccctaagcacaacctattattgttctcagaagctaatatcgactaatcaaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTG
species | Glycine max |
transcript | GLYMA06G19590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAG GGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCC-TAACCAAGEST: gi|192329158|gb|FK021453.1|FK021453
genomic: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAGgtatatactt ... aaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
EST: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAG GGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGEST: gi|23730552|gb|BU763363.1|BU763363
genomic: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAGgtatatactt ... aaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
EST: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAG GGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
genomic: AGCCTGTAGTTGTCAAAAAGGGACAACACATTATTGAAGTCAAGCCTCAGgtatatactt ... aaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
taagcacaacctattattgttctcagaagctaatatcgactaatcaaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTG
gactaat putative branch site (score: 2)
tattattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatataactagttatttttttaaaactagttttttggagcatccctaagcacaacctattattgttctcagaagctaatatcgactaatcaaccatacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTG
- - - - - - - - - - -aaaactag
- - - - - - - - - - - - - - - - - - - gcatccc
- - - - - - - - - - - - - - - - - - - - - - - - -cacaacc