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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttagttggatgaccattgttgatatatctcttttctgtagacattgttattctatctctttgcattttctttattgagtctttattctgcataactctgttgcagGTGTGTTGGTTATCACAGTGAAGCAGATGCTCCTGGGAAAAGACTTGCTAAACCACTCATATTTTGTCGATCCGAGAGTGACTGTCCTATGGAAAATGGC

Basic information

species Glycine max
transcript GLYMA06G18810.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18810.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 3'ss of exon 4
-gtaattttagttggatgaccattgttgatatatctcttttctgtagacattgttattctatctctttgcattttctttattgagtctttattctgcataactctgttgcagGTGTGTTGGTTATCACAGTGAAGCAGATGCTCCTGGGAAAAGACTTGCTAAACCACTCATATTTTGTCGATCCGAGAGTGACTGTCCTATGGAAAATGGC
  |  ||  |  |   |  | ||| ||  || |  |  ||  ||||||       |||  |  | |  ||| | | || ||      ||    |  ||||  | |  |  |||||||||||||| ||  ||||||| ||||||||| |    |||||||| |||||||||||||| ||| || | |||||||| || |||||||||||||| 
gttggttaaatctacgttccaattctttctacagatacttattgtagatga----atttcaaatttaggcaatgttttaatcataagttggccccacatacatttact--agGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatctctttgcattttctttattgagtctttattctgcataactctgttgcagGTGTGTTGGTTATCACAGTGAAGCAGATGCTCCTGGGAAAAGACTTGCTAAACCACTCATATTTTGTCGATCCGAGAGTGACTGTCCTATGGAAAATGGC
                                      gcataac  putative branch site (score: 3)
                                            ctctgtt  CT-rich tract
             attttctttattga  TA-rich tract