1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggcaacttggcaaatattgcttttcagtggtcattgttttgggtacaaagcatttcatgtcgctttactaatctgacatcatttccatactctcttcagGGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAGCTATGTCAACAAAAATATGAACCTTTGTGGCTCAAAGGAGGAAATCACT
species | Glycine max |
transcript | GLYMA06G18400.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT GGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAG
genomic: AACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCATgtaagtattc ... ctctcttcagGGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAG
acaaagcatttcatgtcgctttactaatctgacatcatttccatactctcttcagGGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAGCTATGTCAACAAAAATATGAACCTTTGTGGCTCAAAGGAGGAAATCACT
tttccatactctcttc CT-rich tract
tttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaacttggcaaatattgcttttcagtggtcattgttttgggtacaaagcatttcatgtcgctttactaatctgacatcatttccatactctcttcagGGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAGCTATGTCAACAAAAATATGAACCTTTGTGGCTCAAAGGAGGAAATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - -ttcagtg
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaca