1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgtatcttttggcttttgtttttcaagatatgttttctgccttttatgttttatgaagttacacatgggttctctgatttggtctgcattatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGGTTAT
species | Glycine max |
transcript | GLYMA06G17960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|192326892|gb|FK015134.1|FK015134
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGAACAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|192317518|gb|FK008970.1|FK008970
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|193530927|gb|FK487504.1|FK487504
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAEST: gi|209696468|gb|BW664017.1|BW664017
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGA
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|151396982|gb|EV266855.1|EV266855
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|6724865|gb|AW309264.1|AW309264
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CAGTTTTGGCACAGGAATCTGGGGATCAAG GGTCGTTTGCACGAGTTGGC-AATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|207769493|gb|GD742101.1|GD742101
genomic: CAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|6502012|gb|AW203385.1|AW203385
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTEST: gi|209722634|gb|BW682710.1|BW682710
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATT
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|57574361|gb|CX547336.1|CX547336
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|9440180|gb|BE440690.1|BE440690
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|17023638|gb|BM094672.1|BM094672
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|120532998|gb|EH261131.1|EH261131
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|298182845|gb|HO031580.1|HO031580
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|21639185|gb|BM140231.1|BM140231
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGGGAATTTCAGTGACAGGAGCCEST: gi|254332573|gb|GR846511.1|GR846511
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|120533057|gb|EH261190.1|EH261190
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|151402945|gb|EV272758.1|EV272758
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|298181007|gb|HO022446.1|HO022446
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|4314044|gb|AI461163.1|AI461163
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAAGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|213599779|gb|DB968429.1|DB968429
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCEST: gi|19345836|gb|BM890716.1|BM890716
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAG TGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatg ... ttatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
ttatgttttatgaagttacacatgggttctctgatttggtctgcattatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGGTTAT
ctctgat putative branch site (score: 4)
attatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtatcttttggcttttgtttttcaagatatgttttctgccttttatgttttatgaagttacacatgggttctctgatttggtctgcattatttgtagTGTCGTTTGCACGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGGTTAT
- - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctgc