1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
species | Glycine max |
transcript | GLYMA06G17930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|254335479|gb|GR847007.1|GR847007
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|254329001|gb|GR833373.1|GR833373
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|16106028|gb|BI893768.1|BI893768
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTCGTTCGGGGAAEST: gi|208187245|gb|GD982167.1|GD982167
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|254343730|gb|GR857486.1|GR857486
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|192328314|gb|FK020025.1|FK020025
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGTTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|9259946|gb|BE348093.1|BE348093
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|57575395|gb|CX548370.1|CX548370
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|213617811|gb|DB959395.1|DB959395
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|298194444|gb|HO041092.1|HO041092
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|57575104|gb|CX548079.1|CX548079
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208274596|gb|GE070230.1|GE070230
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207732416|gb|GD708575.1|GD708575
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGAEST: gi|18040877|gb|BM309171.1|BM309171
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|254329000|gb|GR833372.1|GR833372
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|13790786|gb|BG653377.1|BG653377
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208326000|gb|GE121026.1|GE121026
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|254343731|gb|GR857487.1|GR857487
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|7232756|gb|AW568109.1|AW568109
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|193377081|gb|FK342718.1|FK342718
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|151403128|gb|EV272938.1|EV272938
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207710944|gb|GD694008.1|GD694008
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTACTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|192296995|gb|FG990296.1|FG990296
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
gtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
cctgttcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG