1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtaactaattgttatgctttttttactgtctgagcatagcttcctttagtagtttttccttaaataaaattaattattttcttttcattgttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTT
species | Glycine max |
transcript | GLYMA06G14970.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG TAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCEST: gi|22524332|gb|BU083143.1|BU083143
genomic: ATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAGgttccattta ... gttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGC
EST: ATTCCTTGTACTGTATTGTTGGAGATTATATTTTTTGGGAAGAGATTCAG TAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCEST: gi|254324663|gb|GR834088.1|GR834088
genomic: ATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAGgttccattta ... gttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGC
EST: ATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG TAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCEST: gi|208175636|gb|GD973419.1|GD973419
genomic: ATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAGgttccattta ... gttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGC
EST: CTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG TAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGC
genomic: CTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAGgttccattta ... gttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGC
tttagtagtttttccttaaataaaattaattattttcttttcattgttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTT
aattaat putative branch site (score: 3)
ttttcttttcattgtt putative PPT
tagtttttccttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaactaattgttatgctttttttactgtctgagcatagcttcctttagtagtttttccttaaataaaattaattattttcttttcattgttattgcagTAAGAGAATTCAATTTGCCCTCAGTATCCTCCTTTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA