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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttaggaaagaatacaataaattgattctaaaagctatgccaagtgcttggaatctgtgtatatgacttgcctttttgtctatgcttttatgtatattatgaagaggtcctactttaaaatcctatatttattttgttattgcacgcgctttctatagTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATATATCAGTCACTCTGTGTGACATTAGGTTCATTACCAAAGCCAACCAGAGTTT

Basic information

species Glycine max
transcript GLYMA06G14600.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14600.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g21460.1 (Oryza sativa), 3'ss of exon 4
gttcttaggaaagaatacaataaattgattctaaaagctatgccaagtgcttggaatctgtgtatatgacttgcctttttgtctatgcttttatgtatattatgaagaggtcctactttaaaatcctatatttattttgttattgcacgcgctttctatagTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATATATCAGTCACTCTGTGTGACATTAGGTTCATTACCAAAGCCAACCAGAGTTT
                                                                                ||   |   |  || |   |||    || | |    |||         ||||||   | |       |    ||  ||||||| |||||||||||||||| ||||||||| || |||||||| || || || || || || ||||| ||| | || ||  | || ||||||||   |||||
--------------------------------------------------------------------------------gttagtatatgcatctgacttacagtgatggctccttttc--------tatttaacatatcgaccttcctttttggtatagTTCATTGCTGGTTGTGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACCAATCCCTTTGTGTAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTT

upper sequence: GLYMA06G14600.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G10850.1 (Arabidopsis thaliana), 3'ss of exon 4
gttcttaggaaagaatacaataaattgattctaaaagctatgccaagtgcttggaatctgtgtatatgactt-gcctttttgtctatgcttttatgtatattatgaagaggtcctactttaaaatcctatatttattttgttattgcacgcgctttctatagTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATATATCAGTCACTCTGTGTGACATTAGGTTCATTACCAAAGCCAACCAGAGTTT
         |  |   ||| |||  ||| ||     | | | ||     | ||||  || | | |    | | |   |||| ||| ||  |  |||| ||  ||| |||     || ||   | |   | ||| |  | ||  || |      ||| || ||||| ||||||| |||||||| ||||||||||| || || || ||||| ||||||||  | ||||||||  | | | ||||||| || || ||    ||||
------gtaagtggtaacattaagctgaatcctcttgttcttccctac-catggaccctatatgttctccgtagatcttttatctctg--taaatgtctaa-atggaga-----tagttatgagttaaacattaagct-gtgtttactttgattttatacagTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTT

upper sequence: GLYMA06G14600.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 4
gttcttaggaaagaatacaataaattgattctaaaagctatgccaagtgcttggaatctgtgtatatgacttgcctttttgtctatgcttttatgtatattatgaagaggtcctactttaaaatcctatatttattttgttattgcacgcgctttctatagTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATATATCAGTCACTCTGTGTGACATTAGGTTCATTACCAAAGCCAACCAGAGTTT
                                             | ||  ||||  |      | |   |||   |    ||| || | || | |   ||   |   | | | |  |||||    ||    |  ||  ||  |||| | ||       ||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| || || ||||| ||||| |  ||||| ||||||||||| ||||| |
---------------------------------------------aatgactggatccc-----tttactttgtaataaaatct-tgttcttttttgacttgcta---gttacgatgttaaacagttaatagtggttacttcatgcatgtgc-------agTTTGTTGCTGGTTGTGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggtcctactttaaaatcctatatttattttgttattgcacgcgctttctatagTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATATATCAGTCACTCTGTGTGACATTAGGTTCATTACCAAAGCCAACCAGAGTTT
                                           cgctttct  CT-rich tract
       tactttaaaatcctat  TA-rich tract