Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttagtagcttcctttctttttctgacagacaaaatagcatatatttttcaagtatagtttcctcctacaatcatctgatagtatttaacttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAA

Basic information

species Glycine max
transcript GLYMA06G14590.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14590.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g25180.1 (Oryza sativa), 3'ss of exon 4
gttttagtagcttcctttctttttctgacagacaaaatagcatatatttttcaagtatagt--ttcctcctacaatcatctgatagtatttaacttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAA
  | |  |   |||     | ||||| |     | |      |||| ||  ||||  ||||  ||  | ||    ||    | |   | ||    | || | ||||||||||| ||||  |  | || ||   |||||| || |||||||| ||||||||||| || ||||||||||| || ||  |||||||||| ||||| |
--tatcttgaattctagcttatttcttattt-tagatccttttatagttg-caagcttagtagttggttctgacttctgaggctcaaactttctgttttgctagGGTCAAATGCTAACCCTTGTGGAATACCTTCTGCTCCTATATCGTGCCTTGTTGCCAACTCCTGTTTGGTACCGTTTCTTTCTGAACAAGGAATATGGGA

upper sequence: GLYMA06G14590.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g07390.1 (Oryza sativa), 3'ss of exon 4
---------------gttttagtagcttcctttct----ttttctgacagacaaaatagcatatatttttcaagtatagtttc------ctcctacaatcatctgatagtatttaacttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAA
                ||| | ||   |  |||||    | |              |  | |      |||| ||  ||| |        ||  |||| ||      | |  ||   || |    |||| |||||||||||  |  | || |||  ||| || ||||| || || || |||||  | || || ||||||||||||||| |||||||||| |||||||
gtatgctgtttatgcatttgaatactatattttctgtgatctatcattgtgtgccgtttcctgatagcttcaggtgcagtgttatttgtttctgacaaccagtaatcaatcattcctttttgctcagGGCCAAATGTTAACAGTTGTGGAATATTTTCTACTTCTGTACCGAGCATTATTGCCTGCTCCTGTATGGTACCGATTTTTCCTGAACAAGGAGTATGGAA

upper sequence: GLYMA06G14590.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G061980_T01 (Zea mays), 3'ss of exon 4
------gtttta--gtagcttcctttctttttctgacagacaaaatagcatatatttttcaagtatagtttcctcctacaatcatctgatagtatttaacttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAA
      ||| ||  ||| | |   |   |||| |  |       | | ||   | ||    ||||| |     |  |||| | |    | | |  ||      |||  |||| |||||||||||  |  | |||||   |||||| || ||||||||||||||||||||  | |||||||| || || ||  |||||||||| ||||| |
aacattgttgtacagtaacatgtgtgaattttttcccttctgttagaacaaccaatt----agtattgcagaatgttacactaact--acaattctt----cctttttagGGCCAAATGTTAACCCTTGTGGAGTACCTTCTGCTTCTTTATCGTGCTTTGTTGCCAACTTCTGTTTGGTATCGTTTCTTTCTGAACAAGGAATATGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696981|gb|FK638851.1|FK638851
EST:     AAGAGGCCTATTAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCC-A-TAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|37994656|gb|CF806311.1|CF806311
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|9819498|gb|BE555011.1|BE555011
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTNTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193707462|gb|FK647188.1|FK647188
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATG-TAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207794422|gb|GD764746.1|GD764746
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193722599|gb|FK662173.1|FK662173
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193391937|gb|FK355618.1|FK355618
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGC
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGC
EST: gi|207787365|gb|GD756762.1|GD756762
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATAACTCTGCTGCTGTATCGTGCTTT
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTAT-ACTCTGCTGCTGTATCGTGCTTT
EST: gi|193393906|gb|FK358499.1|FK358499
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207780436|gb|GD751671.1|GD751671
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193671928|gb|FK616702.1|FK616702
EST:     AAGAGGCCATAACTTCCGTCGGCCG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|207701528|gb|GD682857.1|GD682857
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|9819411|gb|BE554924.1|BE554924
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCT
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCT
EST: gi|51342137|gb|CO983398.1|CO983398
EST:     TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
genomic: TGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTG
EST: gi|193413170|gb|FK379085.1|FK379085
EST:     AACTTCCGTCGGCAG                         GGTCAAATGTTAACTTTGATTAGAGTATACTCTGCTGCTGTATCGTGCTTT
genomic: AACTTCCGTCGGCAGgttttagtag ... ttatttcaagGGTCAAATGTTAACTTTGATT-GAGTATACTCTGCTGCTGTATCGTGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaagtatagtttcctcctacaatcatctgatagtatttaacttatttcaagGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAA
                                      atttaac  putative branch site (score: 3)
                                            cttatttc  CT-rich tract
                                 atagtatttaacttat  TA-rich tract