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gtataaattttagctgtattgtggattctcttgtttgctagcttgcaatgatttctgtgtgtattcgtgcaaatgattattgtttttctgttggaatacacgtaaatgattgtcatttttctgttggaatacacgtaaatgattgtgatttttctgttggaatacatgcaattgattgtcgtttttctgttggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
species | Glycine max |
transcript | GLYMA06G14050.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGAGATGATTCGGNGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|193542464|gb|FK497570.1|FK497570
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|207681195|gb|GD661942.1|GD661942
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|208297539|gb|GE092810.1|GE092810
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGCGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCCCTCTTTCTCAACTGCGGCCAGEST: gi|193387164|gb|FK352959.1|FK352959
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|208149690|gb|GD947694.1|GD947694
genomic: GTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|193378815|gb|FK345156.1|FK345156
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|208284307|gb|GE083707.1|GE083707
genomic: GTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|193607198|gb|FK560079.1|FK560079
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|151397590|gb|EV267463.1|EV267463
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|21677144|gb|BQ629495.1|BQ629495
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|208291734|gb|GE090630.1|GE090630
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTGTGTGTCTGACATTGATCAACTG GTTACTGAAGAGCGGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|15661924|gb|BI699295.1|BI699295
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGEST: gi|254343883|gb|GR857639.1|GR857639
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
EST: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
genomic: GGGAGGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
tgatttttctgttggaatacatgcaattgattgtcgtttttctgttggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
aattgat putative branch site (score: 4)
tttttctgtt putative PPT
aattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaattttagctgtattgtggattctcttgtttgctagcttgcaatgatttctgtgtgtattcgtgcaaatgattattgtttttctgttggaatacacgtaaatgattgtcatttttctgttggaatacacgtaaatgattgtgatttttctgttggaatacatgcaattgattgtcgtttttctgttggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC