1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcattaataagtcttgttaaagaaactgattagtcttctcggtggctttcttatatagtaagtgctactaagctgttttgtttatctttctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGT
species | Glycine max |
transcript | GLYMA06G13800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCAT GCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAEST: gi|37996010|gb|CF807599.1|CF807599
genomic: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATgttagtatat ... ctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCA
EST: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCAT GCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAEST: gi|254337562|gb|GR845239.1|GR845239
genomic: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATgttagtatat ... ctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCA
EST: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCAT GCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCA
genomic: TTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATgttagtatat ... ctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCA
gctttcttatatagtaagtgctactaagctgttttgtttatctttctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGT
ttttgtttatctttct CT-rich tract
ttttgtttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattaataagtcttgttaaagaaactgattagtcttctcggtggctttcttatatagtaagtgctactaagctgttttgtttatctttctcatttcagGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - gtggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact