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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtttacagttcttgcatattttgccagtttttaaggcctattttgaatgcatagtgcatacctttcatatgatgcataataaagtaatgtaggatgcagctgactttgggtccaacccatatgatgaaaaggatattgaaatgcgttatatggaaaatttattgttgcttaattaatttttttttcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCGAACATAATGTGTCCCGGTCTTACATCTCCTGGGGG

Basic information

species Glycine max
transcript GLYMA06G13720.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6848993|gb|AW351283.1|AW351283
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|298187707|gb|HO031664.1|HO031664
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|37997132|gb|CF808721.1|CF808721
EST:     CAGTGTCCGTGATGGGCCATACATGCCCACCTTGCGGCTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAAATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|209712615|gb|BW653748.1|BW653748
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|298164604|gb|HO014249.1|HO014249
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|298192440|gb|HO036522.1|HO036522
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|151394068|gb|EV263939.1|EV263939
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|298169962|gb|HO018586.1|HO018586
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|209712614|gb|BW653747.1|BW653747
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|9899350|gb|BE608318.1|BE608318
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|254323561|gb|GR836007.1|GR836007
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|151412868|gb|EV282680.1|EV282680
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|192300163|gb|FG989285.1|FG989285
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTA
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
EST: gi|254323562|gb|GR836008.1|GR836008
EST:     CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT                         ATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG
genomic: CAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAATgtaaagttta ... tcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcgttatatggaaaatttattgttgcttaattaatttttttttcttttgtagATCCAAATATAATGAAAAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCGAACATAATGTGTCCCGGTCTTACATCTCCTGGGGG
                               aattaat  putative branch site (score: 3)
                                 ttaatttttttttctt  CT-rich tract
      ttatatggaaaattta  TA-rich tract