Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatattatgcttctttaccctttttgataaatggaaattaggtttaaacgtccgattttgtaactgtattgatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG

Basic information

species Glycine max
transcript GLYMA06G13260.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13260.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0012g02530.t01 (Vitis vinifera), 3'ss of exon 4
-------gtgatattatgcttctttaccctttttgataaatggaaattaggttt--aaacgtccgattttgtaactgtattgatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG
        ||||  | | | |  ||  |  || ||| ||| | | ||  | | |  ||  |||  ||     ||||| |||| |  || ||||||||| |||||||| || ||| ||||||||||||||||||| |||||| | 
gtaacttttgatgctttacatgcttgtcacttgtgagaaaagaatatgggatcttcaatagtctaatggcccaactgaattg-ttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213592699|gb|DB955829.1|DB955829
EST:     AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATG                         GTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATT
genomic: AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGgtgatattat ... gatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATT
EST: gi|298197323|gb|HO044802.1|HO044802
EST:     AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATG                         GTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATG
genomic: AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGgtgatattat ... gatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATG
EST: gi|151395244|gb|EV265115.1|EV265115
EST:     AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATG                         GTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATG
genomic: AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGgtgatattat ... gatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATG
EST: gi|22931632|gb|BU548771.1|BU548771
EST:     AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATG                         GTCTTGACATTACNNTTTTGGGTGGCAATGATTTTTATTCATAT
genomic: AACGTTTGACCAGAATAAAAAAGAGCTGTTGCACAAACTACTTTTACATGgtgatattat ... gatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataaatggaaattaggtttaaacgtccgattttgtaactgtattgatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG
         aaattaggtttaaa  TA-rich tract