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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagctatttatcctcttctaaatagtttcacttttttcacatcatcaagactgaacagctagaaagtatacaaagaagctataagaactaacagaaaataatctaattttttcttaattgcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTTTTCGGGTTGTATAACTAGAATCTTCTGCGAACCCAGAGATAATTGAAAT

Basic information

species Glycine max
transcript GLYMA06G12760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12760.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G77090.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatagctatttatcctcttctaaatagtttcacttttttcacatcatcaagactgaacagctagaaagtatacaaagaagcta-taagaactaacagaaaataatctaattttttcttaatt--gcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTTTTCGGGTTGTATAA---CTAGAATCTTCTGCGAACCCAGAGATAATTGAAAT
                         ||     |    | ||   |  |||    |  | ||  |||    | ||        |  |  | ||  | ||  |||        || |  || |||    ||||||||| ||||||||||||||| | ||| |||||| |||||||   || || ||  |||| ||     |||||  || |  ||      ||||  |  |   
------------------------gtaaggcaaaacctctcttctagtcagagatttaaagacagagcaaacaccttttgtttggtttgtacacatagttaattgctctgcttatgtttgattctatagGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATTCCGCATTGTTTAGACTTTAGAACTTTTTTGGATATATCAGATCTTCAA---

upper sequence: GLYMA06G12760.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g15360.t01 (Vitis vinifera), 3'ss of exon 4
gtatagctatttatcctcttctaaatagtttcacttttttcacatcatcaagactgaacagctagaaagtatacaaagaagctata----agaactaacagaaaataatc-taattttttcttaattgcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTTTTCGGGTTGTATAACTAGAAT-CTTCTGCGAACCCAGAGATAATTGAAAT
       |||  | | ||||     |  | || | |  |||| ||||  ||    |||  | |||  | || |  |||    | |     | ||| | |   || ||||  ||  ||  |  |   |||||||||||| ||||||||||| ||| | ||||| || ||||||||||| ||||| || ||||| ||      ||  ||||  |||   || ||  ||  | | 
------gtatagaacttctt-----tgctctctcatgcttcatatcaaaaaacaagaattgttagcca-taaatgaagtttttgtctcgcaaaacgagctataactaattataggttacttatttctgcagGTCTTCAATGGAAGAGACATTACAAGGATTTAAAAAAGATAGCTGACTCTTTCCGTGTTGTCTAGTCGAGATATTTCTATGAATTGAGGGAGCATAAATA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932074|gb|BU549213.1|BU549213
EST:     TGCCACCGCAGCTGGCAACCGCTTATATTTGTTTGGTGTAACAGGCAGCG                         GTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTT
genomic: TGCCACCGCAGCTGGCAACCGCTTATATTTGTTTGGTGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTT
EST: gi|214007342|gb|DB986933.1|DB986933
EST:     TGCCACCGCAGCTGGCAACCGCTTATATTTGTTTGGTGTAACAGGCAGCG                         GTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTT
genomic: TGCCACCGCAGCTGGCAACCGCTTATATTTGTTTGGTGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaagaagctataagaactaacagaaaataatctaattttttcttaattgcagGTCTTCAGTGGAAGAGACACTACGATGATTTGAAGAAGATAGCTGAATCTTTTCGGGTTGTATAACTAGAATCTTCTGCGAACCCAGAGATAATTGAAAT
                                 tctaattttttctt  CT-rich tract
                 aactaacagaaaataa  TA-rich tract