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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatacaagaactaagatgtttttacatattttattgataatagatttacagtggatttcagctaactttgatttttattgttcactgttgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGC

Basic information

species Glycine max
transcript GLYMA06G10930.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10930.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g05480.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gtatttatacaagaactaagatgtt--tttacatattttat-tgataatagatt--tacagtggatttcagctaactttgatttttattgttcactgttgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGC
                    || || | |     |  |  || |   | |  | | |  || | |||  |  ||  ||||   | |||    ||||     | ||  ||  | | || ||||    |||||||   | ||| |||||| || ||||||||||||   || |||| ||| ||||| || ||||| ||| || |||| ||||||||||||||||||||||
gtatatgtggaattgttacagttttaaaattgtcatgagcatatggatctctacaatccatgtaatatcaatttaatacaaaaggtttgctttaacaaatgtgttctttcatga-tggtgaatgacagCAAGCAGCTGCTGCAATCAGTCAGATCTCATTTGGTACAGAAGAGAGTGTCTCTCCTAAGAAGCCAACTACTCTGCCTGAGGTGGCCAAGCAGCGTGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314071|gb|FK010351.1|FK010351
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|208249617|gb|GE048628.1|GE048628
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAAT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAAT
EST: gi|193341668|gb|FK305942.1|FK305942
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTT
EST: gi|298178909|gb|HO024644.1|HO024644
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|208168639|gb|GD968713.1|GD968713
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|207777531|gb|GD746624.1|GD746624
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAG
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAG
EST: gi|209714511|gb|BW684874.1|BW684874
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|193677425|gb|FK614557.1|FK614557
EST:     TAGAAGATGGCAGTG-CAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|193304020|gb|FK271155.1|FK271155
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|193350671|gb|FK317003.1|FK317003
EST:     AATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: AATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|193673080|gb|FK618942.1|FK618942
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|208175892|gb|GD977245.1|GD977245
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|193385016|gb|FK351498.1|FK351498
EST:     TACGTATGTATCTAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGT
genomic: TACGTATGTATC-AGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGT
EST: gi|193306984|gb|FK272378.1|FK272378
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|213589447|gb|DB973183.1|DB973183
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGGATCAGCCATATCTCATTTGGTG
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTG
EST: gi|193640777|gb|FK587674.1|FK587674
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|15287454|gb|BI471345.1|BI471345
EST:     GAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: GAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|213593687|gb|DB971709.1|DB971709
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|298191866|gb|HO035948.1|HO035948
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|51345323|gb|CO986056.1|CO986056
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|192329307|gb|FK020226.1|FK020226
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACATATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
EST: gi|51336048|gb|CO979914.1|CO979914
EST:     TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAG                         CAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT
genomic: TAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGgtatttatac ... tgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacagtggatttcagctaactttgatttttattgttcactgttgaaatgaagCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGC
                   taactttgatttttat  TA-rich tract