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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagttacatcacttttaagtaaatcctacatcttaggccttgctctctccttgcaatttcataattcacatggcttactttaaatgattctaagttttggtgggcattaattttagGGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG

Basic information

species Glycine max
transcript GLYMA06G10180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10180.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtagttacatcacttttaagtaaatcctacatcttaggccttgctctctccttgcaatttcataattcacatggcttactttaaatgattctaagttttggtgggc---attaattttagGGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG
||| || |||   |     || |   || |    |  | |      ||  ||    | |  | |  | |||   |||  ||| ||||  |  ||  |  | ||| || |     ||  ||||  ||||||   |||||||   ||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| ||||| ||||| |||
gttagttgttctgttgtagttgatctaaactgtgaagtgacagtgagcaatcgttcttctttctttttatttttatgttttattttatttt-ttaaatctgttgatgagtttggttctttttcagGGAAAA--GAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcacatggcttactttaaatgattctaagttttggtgggcattaattttagGGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG
                                           cattaat  putative branch site (score: 3)
             ttactttaaatgatt  TA-rich tract