1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttcataagtttgccctctttccgttgaatacagttttcttttgaacatttaagttttaatagctaagaattctatttctttatatgcttacaaacttgatttgacttatccgatcttgatatgtaataatatgcttacaaatctcatgtatattaaatatacccaatgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACTGAGAGAAAAA
species | Glycine max |
transcript | GLYMA06G08640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|298183696|gb|HO028909.1|HO028909
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGEST: gi|298164673|gb|HO014318.1|HO014318
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAG
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|298173543|gb|HO016879.1|HO016879
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|151411303|gb|EV281114.1|EV281114
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|193591319|gb|FK547764.1|FK547764
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|192328317|gb|FK020028.1|FK020028
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|151412239|gb|EV282051.1|EV282051
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGGAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|58016161|gb|CX702903.1|CX702903
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|151394766|gb|EV264637.1|EV264637
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAGCAACEST: gi|58015274|gb|CX702016.1|CX702016
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|18734019|gb|BM527940.1|BM527940
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|208307232|gb|GE101968.1|GE101968
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|298184733|gb|HO029946.1|HO029946
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: CGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|120534643|gb|EH262776.1|EH262776
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG GTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACEST: gi|298168083|gb|HO013346.1|HO013346
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAG-AAACCTGATTTGAAAG GTGAGTGAGAAGCAGTCGGTGCAGCTG
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttcata ... tgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTG
tgtaataatatgcttacaaatctcatgtatattaaatatacccaatgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACTGAGAGAAAAA
tgcttac putative branch site (score: 2)
ttacaaatctcatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcataagtttgccctctttccgttgaatacagttttcttttgaacatttaagttttaatagctaagaattctatttctttatatgcttacaaacttgatttgacttatccgatcttgatatgtaataatatgcttacaaatctcatgtatattaaatatacccaatgtgctgcagGTGAGCGAGAAGCAGTCGGTGCAGCTGAGAGAGCTGAGAGGAAACAACAACTGAGAGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA