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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctttcctccatgcccaatgtgcttgtcatttagattcaatagaatattttttttaacatatttgctattttatgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 3'ss of exon 4
-------------gtatgt-tctttcctccatgcccaatgtgc----ttgtcatttaga-----ttcaatagaat---attttttttaacatatttgctattttatgt---ctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT
             |||||  || | |  | ||||  ||| |      |  | |||||||     ||  ||    |    ||  || |  || |||  || | || | |   ||  |||||||||||  ||||    |||| ||||| | |||||||||||||||| ||||||  |||  ||||||||||||||||||| || |
gtatgttctttccgtatggatcatgctactatgcttaatatttgatataattatttagaaatagtttcatgtggtttggttcattatctcacattatctttcttctattttctgtagGGCAACATTGCTACCTGCAATTAGACGTTATTTGCCAAAGCATTGGAATGATGACCCTATCATCTGGCATTTTCCATATTTTCGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
EST: gi|213600256|gb|DB964336.1|DB964336
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
EST: gi|193440389|gb|FK410484.1|FK410484
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTACTGCCAAAGCATTGGAACG
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTT-CTGCCAAAGCATTGGAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttagattcaatagaatattttttttaacatatttgctattttatgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT
                        ttttaac  putative branch site (score: 2)
       attcaatagaatattt  TA-rich tract