1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagttcaagaataaacaacaaagtctcttatcgagtcatttgttcttgaatctatttgactttttgttttaagtttaatttctttttcatttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGTTGCTCATGGAAAAG
species | Glycine max |
transcript | GLYMA06G06030.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATTTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|23727551|gb|BU761810.1|BU761810
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|24205319|gb|BU964572.1|BU964572
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|192324671|gb|FK016832.1|FK016832
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG -CACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGA-CTAAGTEST: gi|117557816|gb|EG702201.1|EG702201
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGTGATCATGCACGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|214009325|gb|DB990615.1|DB990615
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGTAC-ATCGAATTGGTAATAAAGCCCTAGCAAAGGAACTAAGEST: gi|151409164|gb|EV278972.1|EV278972
genomic: GAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAG-CCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAG
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAA GCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|6964547|gb|AW433240.1|AW433240
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
genomic: GGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgggtcttc ... ttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGT
ttgaatctatttgactttttgttttaagtttaatttctttttcatttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGTTGCTCATGGAAAAG
gtttaat putative branch site (score: 4)
tttctttttcattt CT-rich tract
tttttgttttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttcaagaataaacaacaaagtctcttatcgagtcatttgttcttgaatctatttgactttttgttttaagtttaatttctttttcatttgaaaacagGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGTTGCTCATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - -gttcttg