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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacttactatcactatttcgtattttatcactttagagtcttaattgcattggcatttctcatacttgtggtggctatgtaaaccaaggttgtttgtatgtcttgtgtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGATTGTTCCTCTTTGAAAAGCAT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208198399|gb|GD997590.1|GD997590
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
EST: gi|208229472|gb|GE022876.1|GE022876
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCNGATACCTGACG
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
EST: gi|208332397|gb|GE128662.1|GE128662
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
EST: gi|193661296|gb|FK607472.1|FK607472
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacttgtggtggctatgtaaaccaaggttgtttgtatgtcttgtgtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGATTGTTCCTCTTTGAAAAGCAT
              tatgtaaa  TA-rich tract