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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttggctattgccacatgtcacatacagatgcaggcacacacgtgtacataaatttatagcttaagttcactcacattaaatcttccctaatcgatatttatttgggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA

Basic information

species Glycine max
transcript GLYMA06G04350.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425062|gb|FK389385.1|FK389385
EST:     CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAGgtaattttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|16996369|gb|BM085741.1|BM085741
EST:     CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAGgtaattttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaagttcactcacattaaatcttccctaatcgatatttatttgggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
                            taatcgatatttattt  TA-rich tract