1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacccctacttagtaaacacacgctttaagttttctgacttcatgacacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGGATCTAGCCCCTGCATATCTGTTGAGATAAAG
species | Glycine max |
transcript | GLYMA06G03310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATCGTGGTTCTGTGCTTCTCATGTCTGATCATTCAGTCTTCACTCATG GTAATCTAGGATCTAGCCCCTGCATATCTGTTGAGATAAAG
genomic: GCATCGTGGTTCTGTGCTTCTCATGTCTGATCATTCAGTCTTCACTCATGgtattgaaat ... ttcatttcagGTAATCTAGGATCTAGCCCCTGCATATCTGTTGAGATAAAG
acacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGGATCTAGCCCCTGCATATCTGTTGAGATAAAG
ctcccctgtttcattt CT-rich tract
aaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccctacttagtaaacacacgctttaagttttctgacttcatgacacatctgcaaaacatttcaaagttctgtttcaagctcccctgtttcatttcagGTAATCTAGGATCTAGCCCCTGCATATCTGTTGAGATAAAG
- cccctac
- - - - - - - -aacacac
- - - - - - - - - - - - - - - - ttctgac
- - - - - - - - - - - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccct