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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttaccctttcactgctctttctagtctctgacttctattagtgttaatctatgttttagatttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG

Basic information

species Glycine max
transcript GLYMA06G03230.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03230.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 4
gtgatttaccctttcactgctctttctagtctctgacttctattagtgttaatctatgttttagatttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttaca------cttgatcaaaa--tcttttcaattctaatttt---cagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG
                                                 | ||  ||  ||||  || |||||   | ||| |||   | | | || |||  |   ||     |  | | || ||  |||    |    || ||||||        ||| || ||||  ||| || |||| || ||||   ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||| |||||| | |||
------------------------------------------------gtgattcatactttaatttgttagttattctgt-atgg--tctgttctgcattgtcaattgagttagccatcctagtggtggtaacatgaatggattttatttttttccttaattaaaaagtctcttaaattttatttttttgcagGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644366|gb|FK594171.1|FK594171
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|193358198|gb|FK322766.1|FK322766
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|151393977|gb|EV263848.1|EV263848
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTTCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|298164161|gb|HO013806.1|HO013806
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|254346175|gb|GR859788.1|GR859788
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|208163154|gb|GD965706.1|GD965706
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG
                                          ttctaat  putative branch site (score: 2)
                                                ttttc  CT-rich tract
                             aaaatcttttcaattc  TA-rich tract