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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgttacctctaatttttttatcttcgcatttactactgtaatctaaagttctataacatacaagacttttgttgtatgattgacattatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAG

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01260.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 5
gtattatgttacctctaatttttttatcttcgcatttactac-tgtaatctaaagttct-ataacatacaagact-tttgttgtatgattga-catta-----tcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAG
    |||| |  || |||||||||  |  || |  || | |  | || | |       | | ||  |  ||   | | | || |||   ||| ||| |      |||||  |||||||| | |||||| |||| ||||| |||||||  ||  |||||||||||||||| || ||||||||||||
---gtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaatcaaaatgtttaaacttatcttttctatttctgatcatcaattttccagGGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatctaaagttctataacatacaagacttttgttgtatgattgacattatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAG
                                        gattgac  putative branch site (score: 3)
              tataacata  TA-rich tract