Sequence
atgc intronic sequence ATGC exonic sequence...atatgctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
Basic information
species | Glycine max |
transcript | GLYMA06G01120.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os10g36870.1 (Oryza sativa), 3'ss of exon 4
atatgctggct--cattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaaga-attgcttgatgc--ttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
| || | ||| | || | | | |||| | | ||| | || || ||||| | || || | | | || | || || |||||| ||||| || || || || ||||||||||||||||| ||||| ||||| || |||||||| ||| | || ||||| ||||| |||||||||||||| |
-tgcaatgaatgccataatgcccttgcaaattgtaatcttg-tgcatatattttactcaaa---tctgcatgagactgttctgacatatggattaatatcattagGTGGCAGAACCGTTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACAGGATGCGTCAGGAAGCCGAAGCAC
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G002859_T03 (Zea mays), 3'ss of exon 3
atatgctggctcattgtcaatttatccagtttgtgcttgatt--tttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgc--ttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
| | | | | || || ||||| || | ||| | ||||| ||| ||| | | | | ||||||| || || | |||||||||| || | || || ||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||||||| || ||||| ||||| |
--ttacccg-taagtgccataatatcct-ttcatacttcgtacatttttttctaacaatcaaacccggacaaagcttgttttaagtgaagcgaactgacatcagGTTGCAGAACCTCTGAGGGCTATGGTTATGGGAGCTCCTTTGGAGGATGCTCGCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGC
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G123624_T01 (Zea mays), 3'ss of exon 4
atatgctggctcat-tgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgc--ttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
|| | | | || || ||||| | | ||| |||| | | || | | | | | ||||||| | | | || | |||||||||| || | ||||| ||||| ||||||||||| |||||||||||||| || || || ||| | || ||||||||||| || ||||| ||||| |
--atttttccatgtgtgccataatatcctttgtcactttgtacatttttcttaaaatcaaacctggacaaa-gcttgttttaagtaatacaaactgtcatcagGTTGCAGAACCACTGAGAGCTATGGTTATGGGAGCTCCTTTGGAGGATGCCCGCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGC
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 3'ss of exon 4
atatgctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtg-aacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
| || || | | ||||||| || | ||| | || || | || | || || | | || | | ||| | ||||||||| ||||| ||| | |||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||| || ||||| ||||| |
acatactctttaaaagtcaattaatgtcatg-gtgttcacttggttctttctttattgcggtttggctactacaatcatatgtcaatcctgaatttgttagGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTAGACATCTTGCTCAACGCTATGACAGAATGCGCCAAGAAGCTGAAGCTC
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g13530.t01 (Vitis vinifera), 3'ss of exon 4
---------atatgctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
|| | | ||||| | |||| |||| || | | ||||| | ||||||| | | | | ||| | | ||| || |||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| |||||| ||||| |
ttaagacatatttacattatcattctaaattc-tccatttaatagtcagtttttcacctt--tataatgtgta-gttatccagtgtttga-----ttctttatttccagGTTGGAGAACCCTTAAGAGCAATGGTAATGGGAGCTCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGAGAGAATGCGAATGGAAGCTGAAGCTC
upper sequence: GLYMA06G01120.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 3'ss of exon 4
-atat-gctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
| || ||||| |||||| | | | | | || | | | | | | | | || | || | |||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| || ||||| ||||| |
cgtgccactttttcattttcaattattgc--tcctctcctatttgctatcacaggcgttgtaatcatgtgctcgatgtggtgctgaatgccttgatttctagGTTGCAGAGCCATTAAGAGCGATGGTAATGGGAGCTCCATTGGAGGATGCTCGACATCTTGCTCAACGCTATGAAAGAATGCGACAAGAAGCTGAAGCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151400692|gb|EV270506.1|EV270506EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
aacattttaagaatt TA-rich tract