1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatgctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
species | Glycine max |
transcript | GLYMA06G01120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCEST: gi|9987696|gb|BE661804.1|BE661804
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
EST: CACAAATGGAGAAGGAGCGTGGGAACTTACTAAAAGCTCTTGGCACACAN GTTTGCAAAGCCCTTAAEST: gi|151395558|gb|EV265435.1|EV265435
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTT-GCAGAGCCCTTAA
EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCEST: gi|18040044|gb|BM308338.1|BM308338
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
ttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
aacattttaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgctggctcattgtcaatttatccagtttgtgcttgatttttttatctgacataatgtttctgcgagtgaacattttaagaattgcttgatgcttagGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCC
- -tgctggc
- - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaac