Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtagGTGGAGGGGGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT

Basic information

species Glycine max
transcript GLYMA06G00690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtg-tagGTGGAGGGGGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                            | |||||||| || |     ||||||  | || |  | |  || |||  ||||  |  | |  |  | |||||| |    |    |||||   || ||     ||||| || || || |||||||| || || | |||  ||||| |||| || || ||||||||||||||||| |||||||| || |||||||| ||||||||
----------------------------ttaatgcataaatgt-----tatatacttgtagagttgtagataattgaattttcttataga-aggagaataatgtaatgtaccaatgttggaataataaaaatagGTAGAAGGAGTGAAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTACACATTCGGTGGACATGCTGTTACTGT

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 4
gtaataacaatttagatttgcaaataaataaatgcatatat-atacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtagGTGGAGGGGGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                          | || |   |||| | || ||   | ||||  | | | ||||||  ||||| | ||| ||   |  | | || | || |    | || || |   | | | || | || |||| || || || || || |||||  ||||  |||| ||||| || || ||||| |||||||||||||||||||| ||||||||||| || |||||
------------------------gtactatacatatatctcattcaaccaaatatccaaa-acatatga--tattaaaattagtaaatg--attttatttatttatt-tatttatttatttgttaatgggcagATGGAAGGAGTGAAACACTCAGGTCCATCCAAGCTGGTGCTATACTTCACAGGGGCTACAAACATTCTCTACACATTCGGGGGACATGCTGTGACTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattagtggctactataataatatgcgatcttgatgttactatgattgtgtagGTGGAGGGGGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                              tcttgat  putative branch site (score: 4)
            tactataataatat  TA-rich tract