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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccaattatccatgcatgttttactttttgcctgctgcatacttccaggctgtattatttaattttaaacttctgttaataagtcagctgtcataaatataacatctgtccatttttgtagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATGCCTATGTAGATTTCAG

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 12
gtatttccaattatccatgcatgttttactttttgcctgctgcatacttccaggctgtattatttaattttaaacttctgttaataagtcagctgtcataaatataacatctgtccatttttgtagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATGCCTATGTAGATTTCAG
                                  |  |  ||   ||  |||   | | || |     |   |  ||||| |   |  | |    | | || ||| |  |        |||| ||||||||||| || ||||||||||||||||| ||  | || |  | ||||||||||||||||||  |||| ||||| || | ||| || ||||| |||
----------------------------------gtatattg---acaaccaattttttttttggcgctggcatattctgatttcactttaaaattgaaaattattattttctgatgcttttatagGCTGGATTTCCGGATGATCTTTCTGAGAATCCACTAGATAGCGTTGAACTTCTTCAGGATCAGCTAGAATGCTTTCCTTACCTTTGCAGATTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttctgttaataagtcagctgtcataaatataacatctgtccatttttgtagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATGCCTATGTAGATTTCAG
                              atataac  putative branch site (score: 3)
                                          tccattttt  putative PPT
                        tcataaatataacat  TA-rich tract