1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgtgtgtgtgtgtctgtatttaaactattgataatagccaactgatccatatcccttgggaatatggtgttctttcatttttatcccgagtcaatttagttagtttcataccaacccgagcttacttaattacactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTG
species | Glycine max |
transcript | GLYMA05G37950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAG GATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGEST: gi|13312011|gb|BG405662.1|BG405662
genomic: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAGgttgtgtgtg ... cactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAG
EST: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAG GATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACACAGACAAGEST: gi|209705435|gb|BW668040.1|BW668040
genomic: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAGgttgtgtgtg ... cactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAG
EST: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAG GATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACACAGACAAG
genomic: AACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAGgttgtgtgtg ... cactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAG
gagtcaatttagttagtttcataccaacccgagcttacttaattacactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTG
aatttagttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgtgtgtgtgtctgtatttaaactattgataatagccaactgatccatatcccttgggaatatggtgttctttcatttttatcccgagtcaatttagttagtttcataccaacccgagcttacttaattacactttgtagGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA