1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacctctatccatgttatttatacgattttttttttctttctgaagtgataatgatgatttgatgatttgtttatattctctttcttttgttttgacagAACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCTATAATATTGAATATGACGCCCAATGAGTTGAAG
species | Glycine max |
transcript | GLYMA05G37830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATCAGAAGTATAACCAAAAAGCTACGACAATTAGTATTTAATCTCAAG AACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCTEST: gi|11687901|gb|BF595577.1|BF595577
genomic: TTATCAGAAGTATAACC-AAAAGCTACGACAATTAGTATTTAATCTCAAGgttagaagct ... gttttgacagAACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCT
EST: ATTATCAGAAGTATAACCAAAAGCTACGACAATTAGTATTTAATCTCAAG AACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCT
genomic: ATTATCAGAAGTATAACCAAAAGCTACGACAATTAGTATTTAATCTCAAGgttagaagct ... gttttgacagAACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCT
agtgataatgatgatttgatgatttgtttatattctctttcttttgttttgacagAACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCTATAATATTGAATATGACGCCCAATGAGTTGAAG
atttgat putative branch site (score: 5)
tttgtttatattctct putative PPT
atttgatgatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacctctatccatgttatttatacgattttttttttctttctgaagtgataatgatgatttgatgatttgtttatattctctttcttttgttttgacagAACAATGCAATCCTAGCACGCCGTCTACTAAATGGAGAGTTGGAACCTTCTATAATATTGAATATGACGCCCAATGAGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-cacctct
- - - - - ccatgtt
- - - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg