1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agttgaaataatgcaccaaaaaattaatataaacaacgaattgttaatttgtgggttgtgatttgtgaaacaaggttgtacttttatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
species | Glycine max |
transcript | GLYMA05G37740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGEST: gi|51863815|gb|CV128296.1|CV128296
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGEST: gi|31463275|gb|CD405303.1|CD405303
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCCATGGGAGAGGAGGGTGATATGGTT GTGGTTGCTGGCCAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGEST: gi|22928303|gb|BU545442.1|BU545442
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAG
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGATTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAG
aatttgtgggttgtgatttgtgaaacaaggttgtacttttatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
tgttaat putative branch site (score: 3)
ttgtacttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgaaataatgcaccaaaaaattaatataaacaacgaattgttaatttgtgggttgtgatttgtgaaacaaggttgtacttttatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - -caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaag