Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattaatctgattgaggatgcttcctaaaatcatattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatttttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG

Basic information

species Glycine max
transcript GLYMA05G37190.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 4
gattaatctgattgaggatgcttc-ctaaaatcatattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatttt-------tgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
      | |||        |||||  |  |||   | || |||||| |||   |    |||     |    |  |  ||| ||||  |       |||   ||| |||||| || || || ||| |||||||||| |||||||||||||||||||| || || ||||||||  | || || || || ||||| || ||  | || |||
------tttgaaatccatagcttcgtttcaatttcaata-ctttta-ctgtagttcttaatcctgatatggatcctgctgtttatgctaatataatgtgtttatgcagCTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG

upper sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G078839_T01 (Zea mays), 3'ss of exon 4
-gattaatctgattgaggatgct-tcctaaaatcatattagcttttagctgctttgtcaaatttca-gttgtaacacacctgattatttttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
 |    ||||| |   |   | | ||  || |   || |    ||||  ||| |  | |  ||     |   ||  | |    || |   |    || |  ||||||||||| || ||| | ||||| || |||||||||||||| |||||||| || || |||||  |  |  | ||||||||| | || ||||| ||||||
tgtgggatctgttcctgtcggttatcagaagaatctaatcatgtttaa-tgcatgttaaggttgtgcatcagaatgctcactgttgtacctcccaatgt--agCTCCGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATTGTCTGTGAAAACACACTGGATGCTAGATTGCAGGTAGTTTTCAGAAAGAAGCTGCCAGAG

upper sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 3'ss of exon 4
gattaatctgattgaggatgcttcctaaaatcatattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatttttgttgatatt---cagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
                 |   ||| | ||| || | || ||   ||||  | |   ||     |  | ||| || |   ||     |||| |||||    |||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||||||||  |  | || || |  ||||| || || |||||||||
--------------gtaaaatttcatcaaaccaaaata-ctaaaagcta-tataagaatcaaaaactctaatac-caatatggcacttgtggatatataacagTGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAG

upper sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 3'ss of exon 4
-----gattaatctgattgaggatgcttcctaaaatcatattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatttttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
       || || |   | |  ||      || | | | |||    |  |    | || |||   || || |           |  ||||||           ||||| || || || ||||| |||||||||||||| || || ||||| || || || |||||||| ||||||||||| |  |||||||  || || |||| |
gtaaaatttcatgtttctcatcat-tactttacatttaaatttttataaaagaacattatcagtgtttagatccggtttgatagtgtattttgaacatgtaatagCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG

upper sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 4
gattaatctgattgaggatgcttcctaaaatc---atattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatt--tttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
  |    ||| ||| ||    |   ||| ||    | |  |||||||      ||     |||     | | ||  | |     ||||   || |   | | |||||| || || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| |  | ||||| || ||||||||||| |||||||||
tgtggggctgtttgtgggaaataaataacatttgtaaaacagcttttg-----ttgaaagaatagtgatggaaaagccctctgatattagcttttcactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324499|gb|GR833924.1|GR833924
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|254319226|gb|GR830574.1|GR830574
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGA
EST: gi|207730669|gb|GD707850.1|GD707850
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTATTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|207820166|gb|GD792452.1|GD792452
EST:     GTCACAAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGAATTAGTGTGTGAA
genomic: GTCAC-AATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAG-ATT-GTGTGTGAA
EST: gi|193361772|gb|FK327732.1|FK327732
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|24136714|gb|BU927224.1|BU927224
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGG-GGGG
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG
EST: gi|31464490|gb|CD406518.1|CD406518
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151403882|gb|EV273692.1|EV273692
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGGAGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGT-GGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|192324900|gb|FK015381.1|FK015381
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGGTGGTGTTG
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTG
EST: gi|193688025|gb|FK633100.1|FK633100
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|254344646|gb|GR851236.1|GR851236
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|193381344|gb|FK345619.1|FK345619
EST:     GTCTATCTTCCGCCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGAT
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGAT
EST: gi|9986302|gb|BE660410.1|BE660410
EST:     GTCTATCTTTCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCNGTGGGGGTGGGGTTGGCTT
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTGGCTT
EST: gi|31305739|gb|CD390942.1|CD390942
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151408815|gb|EV278623.1|EV278623
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208218509|gb|GE020503.1|GE020503
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192312433|gb|FK003197.1|FK003197
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|192312434|gb|FK003198.1|FK003198
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCNNNNNNNNTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA-
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|120495993|gb|EH224160.1|EH224160
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         GTCCGGTGGGGTGGTG
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTG
EST: gi|31307992|gb|CD393195.1|CD393195
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151399756|gb|EV269627.1|EV269627
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATATCTACTG                         CTCCGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|193633928|gb|FK582492.1|FK582492
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGGAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208069092|gb|GD863834.1|GD863834
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTG
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTG
EST: gi|207773430|gb|GD744078.1|GD744078
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|207773962|gb|GD745058.1|GD745058
EST:     GTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAG
genomic: GTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAG
EST: gi|254325492|gb|GR838373.1|GR838373
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208337585|gb|GE138103.1|GE138103
EST:     TCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: TCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208031273|gb|GD827057.1|GD827057
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|22525220|gb|BU084031.1|BU084031
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|19938475|gb|BQ081737.1|BQ081737
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|42723158|gb|CK769057.1|CK769057
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|15199462|gb|BI423843.1|BI423843
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192329098|gb|FK021114.1|FK021114
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208317946|gb|GE117133.1|GE117133
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|193333387|gb|FK300397.1|FK300397
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|31307766|gb|CD392969.1|CD392969
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|21600674|gb|BQ611005.1|BQ611005
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGNGTGGGGTGGTGTT
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCG-GTGGGGTGGTGTT
EST: gi|58017141|gb|CX703883.1|CX703883
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTTTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGATAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|58014529|gb|CX701271.1|CX701271
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|31312201|gb|CD397404.1|CD397404
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|207719588|gb|GD702087.1|GD702087
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|254336378|gb|GR842557.1|GR842557
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208058508|gb|GD860625.1|GD860625
EST:     CTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: CTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|193368874|gb|FK335240.1|FK335240
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208200508|gb|GD997699.1|GD997699
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAATGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|193561942|gb|FK516877.1|FK516877
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGA--TCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|13312082|gb|BG405733.1|BG405733
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTNGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|31470069|gb|CD412097.1|CD412097
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTTTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|5605748|gb|AI899812.1|AI899812
EST:     GCCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|192329097|gb|FK021113.1|FK021113
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|151398513|gb|EV268384.1|EV268384
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|207730885|gb|GD707926.1|GD707926
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|31465554|gb|CD407582.1|CD407582
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|13791035|gb|BG653626.1|BG653626
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGGTGTTGGCTTCTCGTGATGGAAAGATTGTG
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGG-TGTTGGCTTCTCGTGATGGAAAGATTGTG
EST: gi|120491024|gb|EH219191.1|EH219191
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|254344645|gb|GR851235.1|GR851235
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGG-TGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAA
EST: gi|31310477|gb|CD395680.1|CD395680
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|254324500|gb|GR833925.1|GR833925
EST:     GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTG                         CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCAGTCGTCACAATTCTCACGATCTCTACTGgtaatgttca ... tgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgctttgtcaaatttcagttgtaacacacctgattatttttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG
                                      tttttgtt  CT-rich tract
                                  attatttttgttgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gattaatctgattgaggatgcttcctaaaatcatattagcttttagctgctttgtcaaatttcagttgtaacacacctgattatttttgttgatattcagCTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG

- - - -ctgattg
- - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - - -tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacc