1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaattactcgtcacccttgttagtgatctttgtgttcattaatcatgattgaataacagatataaagggttggttctctttaattcagGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAG
species | Glycine max |
transcript | GLYMA05G37010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAG GTTCCAAAGATCACAGCCGAAGAGEST: gi|208118508|gb|GD919199.1|GD919199
genomic: CTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAGgtaattactc ... tttaattcagGTTCCAAAGATCACAGCCGAAGAG
EST: CTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAG GTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGEST: gi|207689872|gb|GD672377.1|GD672377
genomic: CTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAGgtaattactc ... tttaattcagGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAG
EST: TGCTGAGAACAAGAATTTCTTGGAG GTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAG
genomic: TGCTGAGAACAAGAATTTCTTGGAGgtaattactc ... tttaattcagGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAG
gttcattaatcatgattgaataacagatataaagggttggttctctttaattcagGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAG
ttctcttt CT-rich tract
aataacagatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattactcgtcacccttgttagtgatctttgtgttcattaatcatgattgaataacagatataaagggttggttctctttaattcagGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA