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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatagagagtattaccaagtaaccagtatcagaactgaactgatatatatatatatatatatatatatatatatatatatatatatatatactcctttaaaaacaattcagattcttacgttcaattgtttatgtaaaattgatgaattctaattggcttggctaacctctaaactgtacagGTAAACTATGTGAATGCTCATGCCACATCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACGTCAGAATTGAAAA

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaaatagagagtattaccaagtaaccagtatcagaactgaactgatatatatatatatatatatatatatatatatatatatatatatatatactcctttaaaaacaattcagattcttacgttcaattgtttatgtaa--aattgatgaattctaattggcttggctaacctctaaactgtac-agGTAAACTATGTGAATGCTCATGCCACATCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACGTCAGAATTGAAAA
                                                                                                         ||||   |  | | |   |  |  |||| |||    ||  |  |  ||||||||    | ||  |  |   |  ||  | |   |||| |||||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || || ||||| || |||||||| || ||  | || |
-------------------------------------------------------------------------------------------------------gtaaaatgctctacaatgacaaatcaaattatttccacaaccatcttctgaattct----gactcagagacggttaaatttatgttagGTGAACTATGTGAATGCTCATGCAACATCAACTCTGGCAGGGGATTTGGCAGAGGTCAATGCCATCAAGAAGGTCTTCAAGGACACATCTGAGATAAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatgtaaaattgatgaattctaattggcttggctaacctctaaactgtacagGTAAACTATGTGAATGCTCATGCCACATCAACACTGGCTGGTGACTTGGCTGAGGTTAATGCAATTAAAAAGGTTTTTAAGGACACGTCAGAATTGAAAA
       taaaattgatgaattc  TA-rich tract