1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttttattggttaatctttacactgatagtgcatgaaaacccattgatttatatagaaaaaaaaataaaaaaacatttaagggatcatttgaatttgcagGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTGGAGCAGCTCGTGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTG
species | Glycine max |
transcript | GLYMA05G36280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACA GACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG
genomic: GCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAgtaaattcct ... gaatttgcagGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG
gatttatatagaaaaaaaaataaaaaaacatttaagggatcatttgaatttgcagGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTGGAGCAGCTCGTGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTG
cattgat putative branch site (score: 4)
atatagaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttattggttaatctttacactgatagtgcatgaaaacccattgatttatatagaaaaaaaaataaaaaaacatttaagggatcatttgaatttgcagGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTGGAGCAGCTCGTGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - ctgatag
- - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - -cccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa